This site provides information on SNPscan, a web-accessible tool for the analysis of single nucleotide polymorphism (SNP) array data.

SNPscanPlot Click here to use the SNPscanPlot tool
KKISNP (plots/tables) Click here to generate SNP plots and tables
SNPscan browser Click here to visualize SNP data on the UCSC genome browser

Introduction

Credits

SNPscan was written by Jason Ting in the laboratory of Jonathan Pevsner. The Pevsner lab is supported by grants from the NICHD and NIEHS at NIH.

SNPscan was developed in collaboration with Dr. Ingo Ruczinski of the Dept. of Biostatistics in the Johns Hopkins Bloomberg School of Public Health.

The related SNPchip R package has been written by Drs. Robert Scharpf and Ingo Ruczinski in the Dept. of Biostatistics, Johns Hopkins Bloomberg School of Public Health (in collaboration with Jason Ting and Jonathan Pevsner). The R package SNPchip is freely available from the Bioconductor webpage, and the paper describing SNPchip is in PubMed here.

Copyright and Disclaimer

SNPscan is Copyrighted (C) 2005 by Jason Ting and Jonathan Pevsner and is distributed under the terms of the GNU General Public License and comes with ABSOLUTELY NO WARRANTY. This is free software, and you are welcome to redistribute it under certain conditions: see details. For documents and software available from this server, the Pevsner lab and the Kennedy Krieger Institute does not warrant or assume any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed.

Privacy

The Pevsner lab provides this Web site as a public service. We do not collect personal information about you when you visit our Web site. We do not view, store or share your data unless you explicitly request that we do. When you use this site, we may store only the following: the IP address from which you access the Internet, the date and time, the Internet address of the Web site from which you linked directly to our site, the name of the file or the words you searched, and the browser used to access our site. This information is used to measure the number of visitors to the various sections of our site and identify system performance or problem areas. We also use this information to help us make the site more useful.

Sample data
Download/view the source code
Links
Credits, privacy policy
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Please send questions or comments to ting@kennedykrieger.org or pevsner@kennedykrieger.org.

This page last updated: February 26, 2007.