Pevsner Lab Header Picture

Welcome to the pediSNP website. This tool is designed to provide an analysis of Single Nucleotide Polymorphism (SNP) data from a pedigree of two generations: two parents with two or more children. It has been designed based on genotype data exported from Affymetrix CNAT 4.0, Illumina Beadstudio, as well as data downloaded from the HapMap project. However, any SNP data is formatted as any one of these three sources, pediSNP can analyze it.

Run pediSNP Click to run the pediSNP tool
Introduction An introduction into the function of pediSNP
Tutorial A tutorial for first-time pediSNP users. Covers the analysis of Affymetrix, Illumina, HapMap, and custom format data
Sample Pedigree Data Sample pedigree SNP data set (chr2, chr3, chr5, chr9, chr16 and chrX) mentioned in the pediSNP article.
Detailed Explanation of Output Output and explanation of the various types of output patterns identifying inheritance differences and meiotic recombination sites with pediSNP for the sample data
Credits and Contact Please send us questions, comments, or report bugs in using the software

Last updated: February 17, 2012