Code

SNPtrio code. The SNPtrio program has been designed to be a web based tool running on a Linux server, with certain libraries. The implementation itself contains over 70 files, including C, R, and Perl programming languages; HTML scripts; PNG, JPG and EPS images; and text files of sample data as well as chromosome sizes and centromere positions of recent NCBI builds. Because of the image manipulation needs, several publicly available libraries (PerlMagick/ImageMagick, GD, libgd, libpng. liblcms, Freetype2, libmng, libz) need to be preinstalled for SNPtrio to work. These libraries typically are installed by a Linux system administrator who can work out their interdependencies. We strongly recommend that users access SNPtrio through the website. If you want to install it locally and have questions, please contact Jonathan Pevsner (email). The 70+ files are available upon request (please fill out this linked word document and email it back to me). Please note also that while we have developed and tested a program that is stable, functional, and potentially of use to the research community, the documentation associated with the code is not in a completely annotated form intended for easy local installation. SNPTrio is copyrighted (C) 2007 by Jason Ting, Eli Roberson, Ingo Ruczinski and Jonathan Pevsner and is distributed under the terms of the GNU General Public License and comes with ABSOLUTELY NO WARRANTY. This is free software; see details.